Package: calibmsm
Title: Calibration Plots for the Transition Probabilities from
        Multistate Models
Version: 1.1.3
Authors@R: 
  c(
  person(given = "Alexander", family = "Pate", email = "alexander.pate@manchester.ac.uk", role = c("aut", "cre", "cph"),
         comment = c(ORCID = "0000-0002-0849-3458")),
  person(given = "Glen P", family = "Martin", email = "glen.martin@manchester.ac.uk", role = c("fnd", "rev"),
         comment = c(ORCID = "0000-0002-3410-9472"))
         )
Description: Assess the calibration of an existing (i.e. previously
        developed) multistate model through calibration plots.
        Calibration is assessed using one of three methods. 1)
        Calibration methods for binary logistic regression models
        applied at a fixed time point in conjunction with inverse
        probability of censoring weights. 2) Calibration methods for
        multinomial logistic regression models applied at a fixed time
        point in conjunction with inverse probability of censoring
        weights. 3) Pseudo-values estimated using the Aalen-Johansen
        estimator of observed risk. All methods are applied in
        conjunction with landmarking when required. These calibration
        plots evaluate the calibration (in a validation cohort of
        interest) of the transition probabilities estimated from an
        existing multistate model. While package development has
        focused on multistate models, calibration plots can be produced
        for any model which utilises information post baseline to
        update predictions (e.g. dynamic models); competing risks
        models; or standard single outcome survival models, where
        predictions can be made at any landmark time. Please see Pate
        et al. (2024) <doi:10.1002/sim.10094> and Pate et al. (2024)
        <https://alexpate30.github.io/calibmsm/articles/Overview.html>.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
URL: https://github.com/alexpate30/calibmsm,
        https://alexpate30.github.io/calibmsm/
BugReports: https://github.com/alexpate30/calibmsm/issues
Imports: boot, dplyr, ggplot2, ggpubr, ggExtra, gridExtra, Hmisc,
        mstate, rms, stats, survival, tidyr, VGAM
Depends: R (>= 4.1.0)
LazyData: true
Suggests: covr, knitr, rmarkdown, R.rsp, testthat (>= 3.0.0),
        survminer, flexsurv
VignetteBuilder: knitr, R.rsp
Config/testthat/edition: 3
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev zlib1g-dev
Repository: https://alexpate30.r-universe.dev
Date/Publication: 2026-04-15 12:43:48 UTC
RemoteUrl: https://github.com/alexpate30/calibmsm
RemoteRef: HEAD
RemoteSha: 487de8d602609713628bea868f04c06f77896daa
NeedsCompilation: no
Packaged: 2026-07-14 06:52:08 UTC; root
Author: Alexander Pate [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0002-0849-3458>),
  Glen P Martin [fnd, rev] (ORCID:
    <https://orcid.org/0000-0002-3410-9472>)
Maintainer: Alexander Pate <alexander.pate@manchester.ac.uk>